carteriospongia foliascens
Kindt R, Coe R. Tree diversity analysis. In addition, our analyses highlight the value of correlation approaches, such as community co-occurrence networks, for generating ecological predictions about the stability of microbe-microbe interactions under different environmental conditions. Transcriptomes from sponges are important resources for studying the stress responses of these ecologically important filter feeders, the interactions between sponges and their symbionts, and the. PRIMER/PERMANOVAs Mantel-type test, RELATE, was used to compare similarity matrices and hierarchal clustering of sample locations was achieved using CLUSTER analysis. Wie wir mit Ihren Daten umgehen, einsetzen und welche rechtlichen Mglichkeiten Sie haben, erfahren Sie in unserer Datenschutzerklrung. Foliose Dictyoceratida of the Australian Great Barrier Reef. Abhandlungen herausgegeben von der Senckenbergischen naturforschenden Gesellschaft. 21: 93-133, pls 9-10. ; Nurhayati, A.P.D. 165255 (urn:lsid:marinespecies.org:taxname:165255) Classification. We hypothesize that exclusive taxa are acclimated to these habitats. (A) Relative abundance of each bacterial phyla, plus class for Proteobacteria, for C. foliascens individuals from each study location. per sample. Unable to load your collection due to an error, Unable to load your delegates due to an error. Species Carteriospongia endivia. This article about a demosponge is a stub. Responses from these types of environmental conditions range from sponges maintaining highly conserved microbial communities, irrespective of ambient conditions, through to highly sensitive communities that shift composition and function in response to the changing environment. The following information was supplied regarding the deposition of DNA sequences: Processed sequences can be downloaded from the following portal: http://qiita.microbio.me/; study number 1740. eCollection 2014. ISBN 978-1-4615-0747-5 (eBook electronic version). Pp. OTU abundance data were split into offshore and inshore samples and further processed independently. 2005. Marine Sponge Endosymbionts: Structural and Functional Specificity of the Microbiome within, Abdul Wahab MA, De Nys R, Webster N, Whalan S. Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. [Ruiyu] (ed.). Tree reliability was tested by computing 1,000 bootstrap replicates starting with a neighbor-joining tree and using the nearest-neighbor interchange (NNI) tree search option. page 451, Descriptive catalogue of the sponges in the Australian Museum, Sydney. The ratio between Cyanobacteria/Bacteroidetes within this set was calculated using the mean relative abundances of taxa belonging to either of the two phyla. A notable exception however was the recruitment of 3 novel Cyanobacteria OTUs in Carteriospongia foliascens within samples from the high SSC. In: J. van der Land (ed.) Phyllospongia) flabellifera, and other unidentified Phyllospongia spp . Classified sequences were grouped into operational taxonomic units (OTU) at 97% sequence similarity using the furthest neighbor clustering method. Next generation sequencing technologies have greatly expanded our understanding of microbial community composition in a wide range of different systems (Lynch & Neufeld, 2015). The most extensive biogeographical study to date examined 32 sponge species from eight geographic locations revealing a minimal core bacterial community and a large species-specific community (Schmitt, et al., 2012), a pattern subsequently confirmed in other species (Schmitt, Hentschel & Taylor, 2012). Image detail. Oceanic Reefs of the Seychelles. Elenchus zoophytorum sistens generum adumbrationes generaliores et specierum cognitarum succintas descriptiones, cum selectis auctorum synonymis. Global Change Biology. Checklist of marine biota of China seas. Most experimental studies assessing how sponge microbial communities respond to different environmental conditions have demonstrated host-specific microbial responses to temperature, nutrients and sediments (Webster et al., 2011; Luter, Whalan & Webster, 2012; Simister et al., 2012a; Simister et al., 2012b; Fan et al., 2013; Pita et al., 2013; Luter, Gibb & Webster, 2014). (2009). Species: Carteriospongia foliascens, Carteriospongia foliascens (Pallas, 1766), Interim Register of Marine and Non-marine Genera, National Center for Biotechnology Information, Inventaire National du Patrimoine Naturel, https://species.wikimedia.org/w/index.php?title=Carteriospongia_foliascens&oldid=7558693, Creative Commons Attribution-ShareAlike License. Torsten Thomas is an Academic Editor for PeerJ. Volume 12. Pp. nov. and Polyfibrospongia kulit sp. From the union of OTUs, we extracted the abundance of Cyanobacteria and Bacteroidetes and calculated their ratios in both environments. Rank abundance plots were created using BiodiversityR 2.5-2 (Kindt & Coe, 2005) and diversity metrics using rarefied data (n = 7,370 sequences) were created using vegan 2.3-0 (Oksanen et al., 2015), both packages in R. Principal coordinate analysis (PCO) was used to visually compare C. foliascens communities and PERMANOVA, using 9,999 permutations, was used to test differences in community structure between the different geographic locations. Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Biota; Animalia . Hoegh-Guldberg (eds). By 2016, a total of 132 various secondary metabolites ( 1 - 132) had been isolated and characterized from the marine sponge genus Phyllospongia, including P. dendyi, P. (syn. In Fig. (1994). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. Interestingly, together OTUs affiliated to Gammaproteobacteria comprised 43% of the most abundant OTUs, yet no single OTU contains a large number of reads from any location. Bell JJ, Davy SK, Jones T, Taylor MW, Webster NS. Epub 2014 Apr 24. Both NWs show comparable size (NI = 93, EI = 98; NO = 133, EO = 396 where N = Nodes and E = Edges), but when comparing their fragmentation (e.g., the relative fraction of disconnected compartments within a NW) we find that the inshore NW is more fragmented (f = 0.61) than the offshore counterpart (f = 0.52). 3A). Wilkinson CR. Phyla-level bar chart and OTU tree. (1988). Hooper, J.N.A. The following is an overview of "what's that?" Biodiversitas Journal of Biological Diversity. 20(11): 3246-3257. The community composition of samples from the inshore Fantome and Orpheus Islands (separated by <10 km) were tightly grouped, with the communities at these two locations being separate from GBR communities at Green Island and Davies Reef (Fig. Whilst depth differences between the two environments may also contribute to observed differences in community structure, samples collected from 10 m at the inshore Green Island site also contained higher abundances of the two Cyanobacteria OTUs than offshore Davies Reef samples collected at equivalent depths. doi: 10.1093/femsec/fiad061. Although the latter phyla displayed lower relative abundances, they still comprised a high number of OTUs (Table 1). Careers. Morrow KM, Bourne DG, Humphrey C, Botte ES, Laffy P, Zaneveld J, Uthicke S, Fabricius KE, Webster NS. 2). ; Ayling, A.M.; Wilkinson, C.R. Pp. Abstract Eleven new scalarane sesterterpenoids, including three 20,24-bishomo-25-norscalaranes, carteriofenones A-C ( 1-3 ), and eight 20,24-bishomoscalaranes, carteriofenones D-K ( 4-11 ), along with two known analogues ( 12 and 13 ), were obtained from the marine sponge Carteriospongia foliascens collected from the South China Sea. Found in shallow, tropical coastal waters. Similarity percentage (SIMPER) analysis revealed the average similarity between inshore and offshore communities was 32.4%, with Gammaproteobacteria accounting for nearly half of the OTUs responsible for the community differences (46.6% of the overall dissimilarity) (Fig. Pyrosequencing reveals the microbial communities in the red sea sponge, Gao Z-M, Wang Y, Tian R-M, Wong YH, Batang ZB, Al-Suwailem AM, Bajic VB, Qian P-Y. (1897). Here, we generated reference transcriptomes for two common and cosmopolitan Indo-Pacific sponge species: Carteriospongia foliascens and Cliona orientalis. Funding support for HML was provided through a NAMRA Postdoctoral Fellowship. Estuarine, Coastal and Shelf Science. Thin walled cup with ridged patterned surface and short basal stalk/s. In addition, there was a significant difference in species diversity (PERMANOVA, Pseudo-F6,65 = 5.87, p = 0.0002) and richness (PERMANOVA, Pseudo-F6,65 = 7.20, p = 0.0001) estimates between locations, with Inverse Simpson values ranging from 9 to 17 and averaged estimated richness (Chao1) ranging from 3,544 to 5,751 OTUs (Table S2). & Van Soest, R.W.M. Cladus: Unikonta Given that light is one of the most important factors influencing phototrophic sponge distributions (Wilkinson & Trott, 1985), sponges like C. foliascens are more commonly found between 02 m on turbid inshore reefs (Abdul Wahab et al., 2014a) compared to 1030 m in less turbid environments on mid-shelf reefs (Wilkinson & Evans, 1989). (1988). Easson CG, Thacker RW. Ihre Sicherheit, auch die Ihrer Daten, ist uns sehr wichtig. I Taxonomy and Phylogenetic Relationships. Could some coral reefs become sponge reefs as our climate changes? Taylor MW, Radax R, Steger D, Wagner M. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Characterised microscopically by vermiform fibres. Image content on this page is copyright WA Museum. PLoS ONE. The horizontal line represents where the 30 th OTU is placed, with the top 30 OTUs representing 68% of the accumulated proportion of abundance. Webster NS, Botte ES, Soo RM, Whalan S. The larval sponge holobiont exhibits high thermal tolerance. Reference: How to cite this resource - Schoch CL, et al. (eds) Systema Porifera - A guide to the classification of sponges. Journal of the Royal Statistical Society Series B. Berry D, Widder S. Deciphering microbial interactions and detecting keystone species with co-occurrence networks. 4). https://peerj.com/articles/1435/ Pp 170-186. Cleary DFR, Becking LE, De Voogd NJ, Pires ACC, Polnia ARM, Egas C, Gomes NCM. Co-occurrence networks inferred from (A) 15 inshore samples and (B) 15 offshore samples. Microbial diversity in marine biofilms along a water quality gradient on the Great Barrier Reef. Torsten Thomas is an Academic Editor for PeerJ. Transcriptomes from sponges are important resources for studying the stress responses of these ecologically important filter feeders, the interactions between sponges and their symbionts, and the evolutionary history of metazoans. The authors have declared no competing interest. Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. P.S.Z.N.I. Although different sequencing platforms preclude a direct comparison between studies, it is interesting to note that C. foliascens from the Red Sea hosts a similar phyla level diversity but much lower OTU level diversity than the GBR C. foliascens (Gao et al., 2014a). (eds) Systema Porifera - A guide to the classification of sponges. Map of Australia showing the sampling sites for this study. Map of Australia showing the sampling sites for this study. Carteriospongia Hyatt, 1877 Spongia otahitica E. AphiaID. Genomic DNA was extracted using the PowerSoil htp 96-well DNA Isolation Kit (MoBio Laboratories, Inc.), following the manufacturers protocol. Reads underwent quality trimming before assembly with Trinity. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Microbiology and Molecular Biology Reviews. Would you like email updates of new search results? Biogeographic Patterns in Members of Globally Distributed and Dominant Taxa Found in Port Microbial Communities. These OTUs comprised 1,382,146 sequences, with an average of 19,196.47 (7,972.81 1 S.D.) A total of 9,401 OTUs, spanning 15 bacterial phyla, were identified across all individuals at 97% sequence similarity. and transmitted securely. Species Carteriospongia delicata. -, Bell JJ. I Taxonomy and Phylogenetic Relationships. Sequences from the 30 most abundant OTUs were aligned using the SINA web aligner (Pruesse, Peplies & Glckner, 2012). Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. ISBN 0-306-47260-0 (printed version). (2 volumes) Kluwer Academic/ Plenum Publishers: New York, 1708 + xvliii. You have to own the copyright to the photo. 1 and Table S1). Carteriospongia) foliascens, P. lamellosa, P. madagascarensis, P. papyracea, Carteriospongia (syn. In contrast, in the present study we saw a 7% increase in cyanobacterial abundance in inshore samples indicating that the microbiome of C. folisacens is more environmentally sensitive than that of X. muta. Species Carteriospongia fissurella. 2). You can help Wikipedia by expanding it. -, Becerro MA, Paul VJ. For instance, these OTUs comprised 88% of the total cyanobacterial relative abundance of inshore samples vs. 81% of the cyanobacterial relative abundance of offshore samples. We support the open release of data and information about our collections. Effects of depth and light on secondary metabolites and cyanobacterial symbionts of the sponge. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Records of the Western Australian Museum. Supplement 77: 89-103. Increased agriculture of coastal Australian land since European settlement (Kroon, Kuhnert & Henderson, 2012), and associated land run-off to coastal waters, has been a significant contributor to turbidity of the inshore GBR(Furnas, 2003). Cook, S. de C.; Bergquist, P.R. HHS Vulnerability Disclosure, Help 1877) accepted as Polyfibrospongia flabellifera Bowerbank, 1877 (reverted genus) Species Carteriospongia foliascens (Pallas, 1766) accepted as Phyllospongia foliascens (Pallas, . R: a language and environment for statistical computing. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. 2 and Table S3). Netherlands Indian Ocean Programme. Carteriospongia foliascens Thin walled horizontal cup or fan with verrucose surface and sand heavily incorporated into the surface skeleton. Identification of Sponge-Associated Bacteria From the Coast of Kuwait and Their Potential Biotechnological Applications. Widder S, Besemer K, Singer GA, Ceola S, Bertuzzo E, Quince C, Sloan WT, Rinaldo A, Battin TJ. Representative sequences averaged 98.98 bp (0.17 1 S.D.) The following information was supplied relating to field study approvals (i.e., approving body and any reference numbers): Permit for the study: Great Barrier Reef Marine Park Authority Permit #G12/35236.1. 3B). ; Maulidina, N. (2019). 165263 If you upload content to which you do not own the copyright, it may lead to the deactivation of your account. Abdul Wahab MA, de Nys R, Webster N, Whalan S. PLoS One. ; Maulidina, N. (2019). In: P. Hutchings, M.J. Kingsford & I.O. the contents by NLM or the National Institutes of Health. NSW was funded by an Australian Research Council Future Fellowship, FT 120100480. Funding support for HML was provided through a NAMRA Postdoctoral Fellowship. S2). Crdenas CA, Bell JJ, Davy SK, Hoggard M, Taylor MW. Zoological Catalogue of Australia. This study assessed the effects of suspended and deposited sediment on the larva of Carteriospongia foliascens. Pp. Disclaimer. Sponges are a diverse and significant component of benthic habitats worldwide (Bell et al., 2013), contributing to benthic-pelagic coupling through their filtering capacity (Reiswig, 1974), undertaking reef bioerosion and consolidation (Bell, 2008) and making a major contribution to recycling nutrients and energy for other reef organisms (De Goeij et al., 2013). & Van Soest, R.W.M. This service is powered by LifeWatch Belgium, https://www.biodiversitylibrary.org/page/6019361, https://biodiversity.org.au/afd/taxa/PORIFERA/checklist, To Biodiversity Heritage Library (1 publication), To GenBank (3910 nucleotides; 0 proteins), To Sponge Barcoding Database (Carteriospongia foliascens), To Yale Peabody Museum of Natural History (YPM IZ 005031.PR). Samples were collected under the Great Barrier Reef Marine Park Authority Permit #G12/35236.1. Molecular Phylogenetics and Evolution. Whilst high resolution sampling and environmental metadata collection are required to unequivocally define the environmental drivers of community shifts and explore temporal dynamics of the microbial communities, our finding that the ratio of Cyanobacteria to Bacteroidetes increases for sponges in oligotrophic offshore environments suggests that the composition of the C. foliascens microbiome is driven by environmental gradients including light. ISME J. Carteriospongia foliascens is a common Indo-Pacific sponge, which has been reported from the intertidal to the mesophotic. WA: Kimberley from Buccaneer Archipelago to Ashmore Reef. We also created a reference transcriptome for the primary symbiont of C. orientalis Gerakladium endoclionum. In: Hooper, J.N.A. Please enable it to take advantage of the complete set of features! (1994). Sequencing of pooled RNA yielded 409 and 418 million raw reads for C. foliascens and C. orientalis holobionts (host and symbionts), respectively. 2023 Jun 16;99(7):fiad061. Porifera. Volume 12. Lucas Moitinho-Silva analyzed the data, prepared figures and/or tables, reviewed drafts of the paper. Ghannam RB, Schaerer LG, Butler TM, Techtmann SM. 8600 Rockville Pike Maximum likelihood analysis and tree construction were performed in MEGA v6.06 (Tamura et al., 2013), using the Kimura 2-parameter model with a gamma distribution. Bethesda, MD 20894, Web Policies official website and that any information you provide is encrypted However, Bacteroidetes always dominate in mean relative abundance over Cyanobacteria irrespective of whether they were classified as specialists or generalists. Spongien von Sansibar. Fabricius KE, Logan M, Weeks S, Brodie J. EMP sample IDs and collection location of samples from this study, including reference to samples used in the inshore/offshore comparison. 5A we depict the Venn diagram of OTUs present in the inferred NWs, where the union consists of generalists, which define OTUs that were present in both locations and specialists that represent OTUs present in either inshore or offshore locations. Van Soest, R.W.M. Inferring correlation networks from genomic survey data. Simister R, Taylor MW, Rogers KM, Schupp PJ, Deines P. Temporal molecular and isotopic analysis of active bacterial communities in two New Zealand sponges. Federal government websites often end in .gov or .mil. However, it is important to note that direct comparison of OTU richness between studies is often confounded by biases introduced in the laboratory and computational processing steps. Benjamini Y, Hochberg Y. [book]. pp. Phyla with a Spearman Rank correlation greater than 0.8 are overlaid on the plot as vectors, with the number of corresponding OTUs listed in parentheses and identified in Table S3. Scalarane-Based Sesterterpenoid RCE-Protease Inhibitors Isolated from the Indonesian Marine Sponge Carteriospongia foliascens. The number of specialist (51, 91) and generalist taxa (42) are shown. The .gov means its official. Disclaimer: The NCBI taxonomy database is not an authoritative Accessibility (2008). Pallas, P. S. (1766). (eds) Systema Porifera - A guide to the classification of sponges. 2020: baaa062. Muhammad Abdul Wahab conceived and designed the experiments, contributed reagents/materials/analysis tools, prepared figures and/or tables, reviewed drafts of the paper. Unique sequences were aligned against a trimmed SILVA database (v102, trimmed to the V4 region) and chimeric sequences identified by UCHIME (Edgar et al., 2011) were removed. Carteriospongia foliascens Carteriospongia foliascens (Pallas, 1766) Upload your photos Google image | No photo available for this species. Careers, Unable to load your collection due to an error. ; Ayling, A.M.; Wilkinson, C.R. This page was last edited on 5 June 2020, at 16:34. Interestingly, the distribution of C. foliascens at inshore reefs of the Great Barrier Reef is restricted to the intertidal with no individuals evident in adjacent subtidal habitats. eCollection 2022. In: Wells, A. Text content on this page is licensed under a Creative Commons Attribution 4.0 International License. Record of shallow-water sponges in Simeulue Island, Aceh Province, Indonesia. Thin walled horizontal cup or fan with verrucose surface and sand heavily incorporated into the surface skeleton. As a library, NLM provides access to scientific literature. Cladus: Holozoa After 24 h exposure to . S1), the phyla-level diversity decreased with only members of Cyanobacteria, Gammaproteobacteria, Alphaproteobacteria, Bacteroidetes, unidentified Proteobacteria and unclassified bacteria represented (Fig. The following information was supplied regarding data availability: Processed sequences can be downloaded from the following portal: http://qiita.microbio.me/; study number 1740. In particular, Cyanobacteria were expected to be adversely affected by the increased turbidity and reduced light levels of inshore environments, potentially being replaced by taxa that are more efficient consumers of dissolved organic matter (DOM) (Pereira, 2010). government site. Accessibility Symbiotic adaptation drives genome streamlining of the cyanobacterial sponge symbiont. Species Carteriospongia contorta. Representative sequences were classified based on the SILVA database, using a minimum cutoff of 60%. doi: 10.1128/spectrum.02296-21. Emmanuelle S. Bott performed the experiments, reviewed drafts of the paper. -, Abdul Wahab MA, Fromont J, Whalan S, Webster N, Andreakis N. Combining morphometrics with molecular taxonomy: how different are similar foliose keratose sponges from the Australian tropics? & Van Soest, R.W.M. Novel reference transcriptomes for the sponges, Department of Biology, Nordcee, University of Southern Denmark, School of Biological Sciences, University of Western Australia, Centre for Microscopy, Characterisation and Analysis, University of Western Australia, Oceans Institute, University of Western Australia, Australian Institute of Marine Science, PMB No 3, Townsville MC, Queensland 48106 Western Australian Marine Science Institution, Western Australian Marine Science Institution, Department of Biological Sciences, University of Southern California, School of Agriculture and Environment, University of Western Australia, Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Novel reference transcriptomes for the sponges Carteriospongia foliascens and Cliona orientalis and associated algal symbiont Gerakladium endoclionum. Sugden S, Holert J, Cardenas E, Mohn WW, Stein LY. official website and that any information you provide is encrypted PCO revealed considerable microbial variation at the OTU level according to host geography, with 24.3% of the total variation in community composition explained in the first two factors (Fig. A significant correlation was identified between distance matrices from the total dataset and the 30 most abundant OTUs (RELATE; Rho = 0.939, P = 0.001), further supporting the consistency between the two datasets. GPS coordinates for each site can be found in Table S1. Abnormality and disease in sponges have been widely reported, yet how sponge-associated microbes respond correspondingly remains inconclusive. sharing sensitive information, make sure youre on a federal Luter HM, Whalan S, Webster NS. Compounds 1 and 3-6 inhibit R Folienschwamm (Carteriospongia foliascens) Detail, PCO based on the Bray Curtis similarity of the OTUs derived from Illumina sequencing of C. foliascens individuals from each location. In addition, a recent study comparing two distinct color morphs of Petrosia ficiformis reported that biogeography, rather than cyanobacterial symbionts, was responsible for the variability observed in the microbial community between color morphs (Burgsdorf et al., 2014). Thomas F, Hehemann J-H, Rebuffet E, Czjzek M, Michel G. Environmental and gut. See this image and copyright information in PMC. The width of the line represents the relative abundance of the OTU in each location. ISBN 978-1-4615-0747-5 (eBook electronic version). [Ruiyu] (ed.). National Museum of Natural History, Leiden. p. 65-74. Epub 2011 Feb 22.
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carteriospongia foliascens
